| Jan 22,2008 |
Lecture 1 |
Introduction to BME380 |
Simon |
|
Lecture 2 |
Review of Probability |
Simon |
|
Lecture 3 |
Biology Review - Genetics |
Simon |
| |
Jan 28,2008 |
Lecture 4 |
Biology Review - Proteins |
Simon |
|
Lecture 5 |
Problems and Solutions,Complexity |
Simon |
| |
Lecture 6 |
Computer Models, Formal Languages |
Simon |
| |
Lecture 7 |
String Matching and Alignment |
Simon |
| |
| Feb 5, 2008 |
Lecture 8 |
Approaches to Hard Problems |
Mandiou |
|
Lecture 9 |
Tools: Expectation Maximization, Simulated Annealing |
Simon |
| |
| |
| Feb 12,2008 |
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Bad Weather Cancellation |
|
| |
| Feb 17,2008 |
Lecture 10 |
Cloning, DNA Amplification and DNA Sequencing |
Gunzl |
| |
Lecture 11 |
Simulated Annealing |
Simon |
| |
Lecture 12 |
Physical Mapping, Fragment Assembly-Length Markers |
Simon |
| |
Lecture 13 |
Physical Mapping, Fragment Assembly-Hybridization Markers |
Simon |
| |
| Feb 26,2008 |
Lecture 14 |
Artificial Neural Nets |
Rajasekaran |
|
Lecture 15 |
Tools: Expectation Maximization |
Simon |
|
Lecture 16 |
EM in Motif Discovery |
Simon |
| |
Mar 4,2008 |
Lecture 17 |
Gene Finding, HMMs |
Simon |
| |
Mar 18,2008 |
Lecture 18 |
HMMs Basic Problems |
Simon |
| |
Lecture 19 |
Molecular Evolution, Mutation Rates, Molecular Clocks |
Simon |
| |
Lecture 20 |
Character and Distance Phylogeny |
Simon |
| |
| March 25,2008 |
Lecture 21 |
Gene Chips and Large Data Array Analysis |
Simon |
| |
Lecture 22 |
Principal and Independent Components Analysis |
Simon |
|
Lecture 23 |
Clusters, Self-organizing Maps |
Simon |
| |
| April 1, 2008 |
Lecture 24 |
Substitution Matrices, BLAST |
Simon |
| |
Lecture 25 |
FASTA |
Simon |
| |
| April 8,2008 |
Lecture 26 |
Bioenergetics, StructurePrediction |
Simon |
| |
Lecture 27 |
3-D Structure Database Searching, DALI |
Maciejewski |