| Aug 31,2004 |
Lecture 1 |
Introduction to BME300 |
Simon |
|
Lecture 2 |
Review of Probability |
Simon |
|
Lecture 3 |
Biology Review - Proteins |
Simon |
|
Lecture 4 |
Biology Review - Genetics |
Simon |
| |
Sept 7,2004 |
Lecture 5 |
Problems and Solutions,Complexity |
Simon |
| |
Lecture 6 |
Computer Models, Formal Languages |
Simon |
| |
| Sept 14,2004 |
Lecture 7 |
Biological Problems in this course |
Simon |
| |
Lecture 8 |
Problems and Solutions,Complexity _Fundamental Algorithms |
Fuschillo,Jorczak,Lotko |
| |
Lecture 9 |
Problems and Solutions,Complexity _ConvergingHeuristics |
Simon |
| |
Lecture 10 |
Strings: Matching and Alignment |
Simon |
| |
Optional |
Genetics Review |
Simon |
| |
| Sept 21,2004 |
Lecture 11 |
Sequence Alignment |
Simon |
| |
Lecture 12 |
Mutation,Homology |
Simon |
| |
Lecture 13 |
BLAST |
Simon |
| |
| Sept 28,2004 |
Lecture 14 |
FastA |
Simon |
| |
Lecture 15 |
Evolutionary Time |
Simon |
| |
Lecture 16 |
Character Phylogeny |
Simon |
| |
Lecture 17 |
Distance Phylogeny |
Simon |
| |
| Oct 5,2004 |
Lecture 18 |
Cloning,PCA,Sequencing |
Gunzl |
| |
Lecture 19 |
Suffix Trees |
Lundgren |
| |
| Oct 12,2004 |
Lecture 20 |
Physical Mapping |
Simon |
| |
| Oct 19,2004 |
Lecture 21 and 22 |
Motif Finding,Artificial Neural Nets |
Rajasekeran |
| |
Lecture 21 |
Motif elicitation-Student Notes |
Student notes |
| |
Lecture 22 |
Artificial Neural Nets -Student Notes |
Student notes |
| |
| Oct 26,2004 |
Lecture 23 |
Gene Finding |
Simon |
| |
Lecture 24 |
Expectation Maximization |
Simon |
| |
| Nov 2,2004 |
Lecture 25 |
Protein Folding - Bioenergetics |
Peng |
| |
Lecture 26 |
HMM problems and EM -Review |
Simon |
| |
| Nov 9,2004 |
Lecture 27 |
Gene MicroArrays |
Graveley |
| |
Lecture 28 |
NMR Data and Protein Structure Determination |
Hoch |
| |
| Nov 16,2004 |
Lecture 29 |
Low Complexity DNA, Forensic Genetics |
Strausbaugh |
| |
Lecture 30 |
Patterns |
Simon |
| |
Lecture 31 |
Principal Component Analysis |
Simon |
| |
| Nov 30,2004 |
Lecture 32 |
Conceptual Data Modeling of Protein Conformation |
Gryk |
| |
Lecture 33 |
Clustering Algorithms |
Simon |
| |
| Dec 7,2004 |
|
STUDENT FINAL PROJECTS |
|
| |
|
Sickle Cell Disease
Causes, Treatments, and Gene Therapy |
Nicole Zabetakis |
| |
|
Design of Neural Net in Acute Ischemic Stroke |
Marie Luby |
| |
|
Gene Finding - Locating CpG islands and GC rich regions |
Jin Jun |
| |
|
Calculating Melting Temperatures for Oligonucleotides |
Justin Kennedy |
| |
| Dec 14,2004 |
|
STUDENT FINAL PROJECTS |
|
| |
|
Pathogen Identification using String Barcoding and Universal Tag Arrays |
Claudia Prajescu |
| |
|
HMM Gene Finding |
Victor Compe |
| |
|
Biological Data Compression |
Dragos Trinca |
| |
|
DNA Cryptography |
Bogdan Pasanuic |
| |
|
Modeling of a Perceptron Network using Labview |
David Kaputa |