| Aug 26,2003 | Introduction | Simon | |
| Sept 2,2003 | Conditional Probability and Bayes Theorem | Simon | |
| Sept 9,2003 | Problems to Consider | Simon | |
| Strings: Matching, Alignment Dynamic Programming with Global and Local Alignments |
Simon | ||
| Sept 16,2003 | Basic Linear Alignment and Search Tool (BLAST) | Simon | |
| Sept 23,2003 | Sequence Alignment with FFT | Rajasekaran | |
| Review BLAST | Simon | ||
| FastA | Simon | ||
| Evolutionary Time | Simon | ||
| Phylogeny- Parsimony algorithms | Simon | ||
| Sept 30,2003 | Cloning,Vectors,Hybridization and Probes | Mosavi | |
| Introduction to Artificial Neural Networks | Lundgren | ||
| Review Evolutionary Distance and Parsimony Algorithms in Phylogeny | Simon | ||
| Distance Algorithms in Phylogeny | Simon | ||
| Oct 7, 2003 | Physical Mapping | Simon | |
| Oct 14, 2003 | GeneFinding, Hidden Markov Models | ||
| Oct 29, 2003 | Bioenergetics and Structure Prediction / Drug Design | Peng | |
| Data considerations in Pattern Discovery and Cluster Analysis | Simon | ||
| Nov 4, 2003 | Microarrays: Gene Chips | Graveley | |
| Principal Component Analysis | Burleson | ||
| Nov 11, 2003 | Protein Folding | Rajasekeran | |
| Review of PCA - Linear Algebra | Simon | ||
| Clustering: Nearest Neighbor,k-Means, Self Organizing Maps | Simon | ||
| Nov 18, 2003 | 3-D Database Searching / Structure Alignment | King | |
| Course Review | Simon | ||
| Dec 2, 2003 | FINAL PROJECT PRESENTATIONS |
||
| Implementation of Simulated Annealing on the Traveling Salesman Problem using FORTRAN: An Application and Explanation. | Laura Cimino | ||
| An Implementation of Artificial Neural Network Approach Towards Gene Pathway Analysis | Rishi Gupta, Vinay Gupta | ||
| A Randomized Approach to Multiple Sequence Alignment -A novel idea to reduce the time of calculation for the distance matrix using randomization. | Vishal Tharpar | ||
| Dec 9, 2003 | FINAL PROJECT PRESENTATIONS - concluded |
||
| Comparison of clustering algorithms and their use in understanding of the gene expression data | Praveer Mathur | ||
| Metallothionein and Chemokine Homology: Using Dynamic Programming to Compare Protein Sequence and Function | Darryn Unfricht, Andy Sweatt | ||
| Sequence matching using neural networks | Francisco Rodriguez, Mauricio Barrero | ||
| Implementation of Suffix Tree in Java and Some Applications Based On It | Jun Song |