| Sept 3,2002 |
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Introduction |
Simon |
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Biology Review -I |
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Sept 10,2002 |
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Review of Probability |
Simon |
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Algorithms and Complexity |
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Biology Review -II |
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| Sept 17,2002 |
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Biological Issues |
Simon |
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Algorithms on Strings -Matching and Alignment
Dynamic Programming,Global and Local Alignment |
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| Sept 24,2002 |
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String Matching-Revisit: Suffix Trees |
Lundgren |
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Suffix Trees: Primer Selection |
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Multiple Sequence Alignment |
Simon |
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BLAST |
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| Oct 1,2002 |
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FastA |
Simon |
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Phylogeny |
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| Oct 8,2002 |
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Review Molecular Genetics
Cloning
DNA Sequencing
Promotors |
Mosavi |
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Oct 15,2002 |
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Physical Mapping
Restriction Maps and Distance Markers
Hybridization and Sequence Markers |
Simon |
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Oct 22,2002 |
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Expectation Maximization |
Simon |
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Gene Finding
Intoduction to Hidden Markov Models |
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| Oct 29,2002 |
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Gene Arrays |
Rowe |
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Hidden Markov Models-Review |
Simon |
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Hidden Markov Models-Part 2. |
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| Nov 5,2002 |
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Protein Folding |
Peng |
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Alignment of Three Dimensional Structure - DALI |
King |
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| Nov 12,2002 |
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Reduction of Large Volumes of Data
-Principal Component Analysis
-Clustering |
Simon |
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| Nov 19,2002 |
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Artificial Neural Nets -Perceptrons
Promotor Region Detection |
Lundgren |
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Clusters: Partitioning
Review of K-Means and Self-Organizing Maps |
Simon |
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